Charlie loses his first Hero Rising ever to a new player named Grudge, a teenage boy trained by Elias Powers. Grudge is working with Damaged to take down Aaron Stone and unleash a deadly virus on the world, and when Damaged, U and Elias Powers capture the President of the United States, Aaron Stone must infiltrate the White House, free the president and stop the mutants before it's too late.

Aaron and Dark Tamara have to go undercover at a private school to find out what's going on with some students and to see if Damaged is involved.

Charlie is forced to ditch his date with cheerleader Irina Webber when a new and improved Mr. Galapagos returns to steal the Forced Fusion battery. Meanwhile, Jason invites a bunch of girls from school to go on a joy ride in Charlie's new car.

Aaron is photographed while stopping an armored car heist, forcing him to let Mr. Galapagos escape when more cameras are present. Meanwhile, Jason, and a classmate who has a crush on him begin to question just who and what S.T.A.N. really is.

Aaron is detained for questioning when he seemingly kidnaps T. Abner Hall and must convince S.T.A.N. and Dark Tamara that it wasn't him, but the shape-shifting mutant U.

Damaged hires a high-tech bounty hunter named Trace to hunt down Aaron Stone. Meanwhile, Charlie manages to catch the eye of the track coach by using his special shoes, the X5's in the long jump, much to Emma's chagrin since he is only supposed to use those shoes on Aaron Stone missions.

Charlie's plans a date with a girl named Carrie watching her favorite horror movie. But his plans are thwarted when Hybrot, Damaged's liquid computer that can steal and store memories sneaks into the house. Charlie must find a way to shut down the Hybrot, get his friends' memories back, all without revealing his alter ego to Carrie and Jason.

Charlie loses his first Hero Rising ever to a new player named Grudge, a teenage boy trained by Elias Powers. Grudge is working with Damaged to take down Aaron Stone and unleash a deadly virus on the world, and when Damaged, U and Elias Powers capture the President of the United States, Aaron Stone must infiltrate the White House, free the president and stop the mutants before it's too late.

Stan is replaced by Hunter, a hip teenage android who helps Aaron Stone battle General Cross, but Aaron completly forgets about S.T.A.N in place of the new Hunter. During a fight, Hunter takes a blast from a laser pistol on the mission and ends up short circuiting, causing him to think that his new mission is to destroy Aaron Stone.

Charlie battles father and son villains with the power to stop time. Meanwhile, his poor school grades and academic probation threaten his ability to play basketball.

Charlie takes his brother Jason to the 'Hero Rising' tournament for his birthday with Vas, Ram, Emma and Stan in tow. At the tournament, the Omega Defiance locates Aaron Stone and sets out to destroy him. Jason sees Charlie as Aaron Stone for the first time battling it out against the Omega Defiance, but thinks it's a show Charlie's put on for his birthday.

When Charlie (Aaron Stone) discovers that his father worked for the Omega Defiance, the news sends him into a tailspin as he tries to prove that his father wasn’t evil. Charlie follows clues left by his father to track down an intelligence serum, which leads Aaron to a rematch with Damaged over the vial. With new threats to the world, T. Abner Hall enlists Vas and Ram to create a "Hero Rising" expansion pack incorporating the new villains to help Charlie train for his inevitable confrontation with this new evil. Meanwhile, Jason pretends to be Charlie as he begins working at the video game and comic store.

A bad guy called 'Powers' abducted Emma, so Aaron has to find her and get her back. For his bad Powers has a satellite system built to chase and destroy Aaron Stone.

A new threat arises when the evil hooded villain, Damaged, frees himself and a bus full of failed experiments, criminals and mutants. Once free, Damaged begins picking off the remaining Omega Defiance members looking for the last vial of intelligence serum. Dr. Necros comes looking to Aaron Stone for protection, but instead lures him into Damaged’s clutches. Meanwhile, Jason is determined to get Charlie a dream job working at the video game and comic store.

When Jason accidentally sells the Gauntlet, Aaron must confront Shackles without his trusty weapon. Meanwhile, a criminal uses the Gauntlet to rob a bank.

Xero, the evil boy computer genius, takes over a high-tech skyscraper and challenges Aaron to fight his way out through a gauntlet of modern office equipment that has turned deadly.

Aaron Stone is assigned to guard the daughter of an important foreign dignitary, but her shenanigans get her easily kidnapped by Steeltrap; Aaron must attempt to figure out how to save her, but his plan isn't formed without some unexpected advice.

Charlie develops a crush on Tatianna Caine, a girl he rescues while trying to recover stolen radioactive material. After Tatianna reveals a secret about herself, S.T.A.N. must rescue Aaron. Meanwhile, Emma enlists Jason to help run her campaign for class president.

Aaron Stone enlists Dark Tamara for help when Zefrin and his ninjas steal a weather device from Hall's secret storage facility to destroy a metropolitan city. Meanwhile, Jason takes a photo that threatens the secret identities of Charlie and S.T.A.N.

Helix's newest half-human mutant stows away on the SSJ in an attempt to destroy Aaron Stone, and now it's up to S.T.A.N. and Emma to keep Charlie safe until he can learn how to defeat the mutant on "Hero Rising." Meanwhile, Jason becomes jealous of Charlie's accomplishments and tries to make a name for himself.

While on a stakeout, Stan tells Charlie how the Omega Defiance came to be and how Hall was betrayed by his friends. Charlie tells Stan how he came up with the name Aaron Stone.

Charlie realises that Emma has never been to a school dance before and decides to take Emma to their school formal and invite Vas and Ram as their guests. Charlie picks them up in the SSJ, but on the way, Hall sends Aaron Stone on a mission to pick up a set of blueprints before Kronis gets to them. When, Kronis captures and holds Vas and Ram hostage, he will only release them in exchange for the blueprints. Aaron Stone must enlist Hall's daughter, Tatianna, to find Kronis, save Vas and Ram and make it to the dance before it's over.

While trying to stop Sector 21 escapee Hive from turning the world into mindless zombies, Aaron Stone unknowingly transports African Zombie Weevil bugs containing Hive's mind controlling venom back to Eastland. The weevils hitch a ride on S.T.A.N. and end up infecting Jason and half of the school. With the toxic venom slowly transforming them into insects, Aaron must get a sample of Hive's venom to Emma so she can engineer an antidote before it's too late.

Charlie Landers is recruited by T. Abner Hall to become Aaron Stone, Charlie's fictional Hero Rising video game avatar. Charlie's life will never be the same again.

The truth behind Hero Rising is revealed to Charlie and he goes on his first mission to save the world. He has to prevent Souljacker from releasing a lethal toxin.