Flower gives birth to her third litter of the year. The Whiskers have reunited and have driven away the Zappas from their territory, then tragedy strikes the Whiskers family.

The Kalahari is in serious drought, which splits the Whiskers for nearly a month. Although the Commandoes occupy the territory, Flower returns with half the group to their old manor in a desperate attempt to search for food. Flower's daughter, Rocket Dog, is left in charge of the remaining family and has problems dealing with leadership.

Rocket Dog's second litter of pups arrive at a time when the Whiskers are at their weakest. However, the survival of the new pups becomes uncertain when a dangerous situation presents itself.

Big problems evolve at Meerkat Manor because Flower and Mozart are pregnant at the same time. Youssarian is left to babysit Flower's second litter of year. Mozart attempts to exert her authority on the Whiskers.

Heavy rains leave the Kalahari covered with lush foliage, with tall grasses and beautiful flowers. Although life has never been better for the Whiskers, unusual conditions could mean disaster for the family.

A pair of babysitters takes Rocket Dog's pups on an unexpected trip away from the burrow, which causes major problems when they encounter a rival gang.

Wilson and Phillippe leave on a mission to meet female meerkats and hopefully find a group in which they can join.

In her final days of pregnancy, Rocket Dog seeks a new burrow so she may give birth to her pups. Zorro learns what being a Commando is like as Nikita exerts her authority on her pregnant subordinates.

Season 2 brings winter to Meerkat Manor. The Whiskers did not find Shakespeare after the Lazuli attack and he is presumed dead. Other tragedies are reshaping the families and Youssarian hopes to become the dominant male of the Lazuli clan.

When the Whiskers are caught raiding their rival's burrow, they are forced to flee with dire consequences. Flower learns one of her daughters has a secret.

After Flower disappears mysteriously, Rocket Dog is left to lead the group. Dire consequences ensue when roving males from the Zappa appear and the pups become their victims.

A vicious Nikita defends her territory when the Whiskers wander onto Commando territory.

Youssarian abandons his babysitting duties and leaves Flower's pups alone to face a terrifying rain storm. In an attempt to expand their territory, the rival Lazulis move a little too close to the Whiskers.

Although Flower's newest litter is welcome in the family, Mozart's unborn pups face an uncertain fate. She weighs her options as she tries to avoid losing her second litter of the year.

The third season opens with Flower leading the Whiskers gang to better hunting grounds. When they cross into territory claimed by the rival Zappa clan, an altercation with them ends with a missing pup.

Maybelline dominance over the Aztecs begins to crumble and members start leaving the gang. Rocket Dog has similar problems with the Whiskers.

Sophie and Axel are distracted by Wilson when they are supposed to be babysitting, which leaves Rocket Dog's pups unattended. Meanwhile, Maybelline and Rocket Dog encounter difficulties of their own.

As Mozart's banishment continues, Flower and the pups get into a vicious fight with the Commandoes when the Whiskers get split up.

Flower, as the dominant female of the group, has a lot to worry about, including her wounded son, Shakespeare, rivals, and her children's affiliation with the rivals.

Mozart, who was evicted from the Whiskers a month earlier, is pregnant. Without the family's support, her pups most likely will die. Flower has a new litter and the rain ensures there will be a plentiful supply of food for all the meerkats.

Lead by a pregnant Maybelline, the Aztecs battle former rivals while Nikita's pups create chaos in the Commando den.

Mozart is allowed to return to the family, but there serious consequences ensue when the Whiskers battle with the Commandoes. After three weeks of rain, Flower's newest litter of pups finally emerge from the burrow.

The Commandoes, a new enemy family, spend the night on the Whiskers territory. A conflict ensues between the Whiskers, the Lazuli and the Commandoes.

The Whiskers are getting acquainted with their new territory as Mozart and Kinkajou compete for the role of dominant female of the new Starsky group.

Lola, the dominant female of the Zappa, is missing. In her absence, Punk attempts to take charge of the Zappa. When the wounded Lola makes her way home, she is greeted by a coup and her dominance is taken by her sister, Punk.