The Ponies find a puppy and decide to keep her and build her a doghouse and name her Dinah. When the new puppy is reunited with her family the following Spring, the Ponies are sad to see her go, but they realize that even though friends come and go they will never leave their hearts.

The baby Ponies are bored and want Ribbon and Buttons to play a game with them. Ribbon suggests that they play a game of Make Believe and runs out to go get them a red ball to use in their game. She explains that the red ball is magic and can be anything they want it to be. While she's gone the baby Ponies take turns imagining what the red ball will be...

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The Flouries have taken Masquerade hostage and are on their way to sucking the life out of Dream Valley unless the ponies can stop them!

After a magical mishap, Fizzy, Shady, Wind Whistler and Gusty must live each other's lives until they can restore the balance of nature.

The Bushwoolies spy the Raptorians taking Lickety-Split, Gusty, and Heart Throb to the Black Mountains and rush to Paradise Estate to tell the others. Megan takes Magic Star, Paradise, and North Star to rescue them, letting the Bushwoolies lead the way. None of them notices Shady and Molly secretly following as backup rescuers. While the rescue is taking place, Lickety-Split, Gusty, and Heart Throb learn what will happen to Ponyland once Porcina's cloak is repaired.

Posey finds some sentient flowers wandering around her garden and offers them shelter and water, but she has no idea what they have in store for her to repay her kindness!

There's a menacing ghost inside Paradise Estate! The ghost turns out to be a shape-shifter named Pluma, who has come to reclaim half of an amulet that is buried underneath Paradise Estate. She's been forced to find the amulet by Squirk, who has kidnapped her grandfather until she can bring the amulet to him. Once Squirk has both halves of the amulet, he will be able to use his powers to flood Ponyland.

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The Raptorians discover that the captured ponies' hair grows back instantly once cut off. Not only are Lickety-Split, Gusty, and Heart Throb then forced to stay, but they are also ordered to weave Porcina's new cloak themselves. The search party is reunited with the catpured ponies only after the magic cloak has been finished and delivered to Porcina. The captives inform the others of Porcina's threat to turn Ponyland into glass and the Raptorians' plan to claim it as their new kingsom. Before anything can be done, Porcina has cast a spell through her mirror that turns all of Ponyland and every creature living there into glass.

The First Tooth Baby Ponies are put in charge of the Newborn Twines: Sniffles & Snookums and Milkweed & Tumbleweed. The unruly twins are temporarily subdued with the promise of ice cream, but the First Tooth Baby Ponies must first reunite feuding ice cream makers Rocky Ripple and Fudgy McSwain, who have cut off Ponyland's ice cream supply.

The witches from the Volcano of Gloom have devised a way to steal the Flutter Ponies' Sunstone. Without the Sunstone, Flutter Valley will wither and die! The witches have enlisted the help of Queen Bumble and the bees from Bumleland, who also hate the Flutter Ponies, to steal the Sunstone and take it to Bumbleland where it will help flowers grow so they have all the nectar they need. The witches in turn will get Flutter Valley, which will be dark and gloomy without the heat of the Sunstone.

Dream Valley is full of activity as the Little Ponies train for the Pony Olympics. What the ponies don't know is that three Raptorians are flying overhead in search of magical material to repair Princess Porcina's cloak. The Raptorians think their search is over when they discover that the ponies are magical creatures. Meanwhile, Shady confides in Molly that she feels like everyone can do something special except her.

A pair of monkeys called Gizmonks take Danny and Surprise prisoner until Megan turns over the Rainbow of Light to them.

When Spike discovers that he can now breathe fire, he searches for other dragons who can teach him to control it. When he finds some, he learns more than he bargained for.

The Ponies come to the aid of two wronged royals when the attend an exclusive party at the Palace de Branforr. Meanwhile, the First Tooth Baby Ponies learn to be careful what they wish for.

The Bumbles steal the Sunstone and take it back to Bumbleland, where it promptly melts the snow and grows hundreds of flowers. The Flutter Ponies are captured and put in a honeycomb prison. After trying to use their wings to blow the prison apart, Queen Bumble orders honey to be thrown into the prison to immobolize their wings. Meanwhile, the other Ponies are trapped on a rope bridge with the Furbobs and the Stonebacks are eating the ropes at both ends of the bridge. The bridge breaks and they all manage to land safely, except Baby Cuddles, who broke her leg. They decide to take her to Furbobia to mend her leg.

Morning Glory and Sting escape Bumbleland to find help.

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Megan and the others come to free the Flutter Ponies, but end up captured themselves!

Shady and Molly reveal themselves to their friends; Shady then devises a plan to make a fake cloak out of shed Bushwoolie hair so that they can exchange it for Porcina's cloak and reverse the spell. Everything goes fine until the switch has to be made: the lights go out, the cloaks get mixed up, and Megan is forced to guess which one is real when the Raptorians arrive. Porcina tries to turn the intruders into glass but cannot bring herself to cast the spell – these beings are more real to her that the poor souls she transformed through her mirror. Her hesitation causes the Raptorians to turn on her and steal her cloak so that they can cast the spell themselves. But it turns out Megan took the right cloak after all. This brings about a tug-of-war that tears the cloak, releases its magic, and turns the Raptorians into glass. Princess Porcina repents her old ways and restores Ponyland and the Little Ponies before moving in with the Bushwoolies as their new hair groomer.

Baby Heart Throb, Baby Lofty and Baby Half Note want to sing backup for Knight Shade. But to their dismay, he has stolen their shadows, which contain all of their energy and substance. The Ponies soon discover that the evil wizard Arabus is behind Knight Shade's behavior, and now it's up to the Flutter Ponies to save the day.