The Fudou Myouou, an organization of monks who believe all spirits attached to Shamans are evil spirits, want to send Amidamaru to the other world. When the samurai starts to believe that he is indeed an evil spirit, Yoh has to remind him of their true relationship, and save Mosuke’s spirit and Manta’s body in the process.

Yoh and the others are troubled because they still aren't a match to Hao. Meanwhile, the Lily Five wait for their first match, only to find out it is going to be much more troublesome than they thought.

The Lily Five group is willing to face Hao, and Yoh is unsure of what to do: if it is their choice, is it okay to let them fight and die? Meanwhile, Ren tries to overcome his limits to face Yoh’s father.

Lyserg desperately wishes to be bestowed with an angel by the Iron Maiden Jeanne, and Morphine, Yoh and the others fear that he is now too far from their reach.

Manta’s plan of cheering Ryu up turns upside down when he is kidnapped by the X-Laws, who want to lure Yoh into their trap, the Gate of Babylon. In his determination to be strong enough to help Yoh, Manta discovers something about his computer, and the X-Laws get in trouble when Hao intervenes in the fight.

The determination of the X-Laws, even in face of certain death, allows the Iron Maiden to recover and open the Gate of Babylon. However, their plan might bring exactly the opposite of what they were trying to achieve, when Hao takes advantage of their weakness.

After consuming Jeanne’s spirit, Hao decides to take the Great Spirit by force. Meanwhile, Yoh and the others recover from the battle in the Gate of Babylon, and muster their will to fight to prepare for the last battle.

Yoh and Ren learn other, stronger ways of manifesting their Furyoku, and the X-Laws get ready for their last stand, as Lyserg finally discovers his true strength upon witnessing the sacrifice of his comrades.

Yoh and the others are called to the Holy Ground of the Stars, wherein lies the Great Spirit. While Manta follows Hao throughout the place and Yoh tries to stop his twin’s advance, Yoh’s companions have to face Hao’s followers, who received the gift of strength from their master.

When Ren is heavily injured, HoroHoro, Ryu, Faust, Chocolove and newly arrived Lyserg fight to protect him, revealing, to Hao’s followers, what is the true meaning of companionship. Meanwhile, Anna’s rosary of 1080 beads is bestowed with the power of sealing Hao.

The big fight between Hao and Yoh starts, as his friends try to defeat the Great Spirits’ guardians, and stop Hao’s plans of uniting with the Great Spirits. However, things take a darker turn when Hao lives up to his promise of asking for Yoh’s body back…

Driven by anger and grief, Yoh’s companions fight for revenge against Hao, who has just absorbed his twin’s soul. However, Manta is there to remind them that their true strength does not come out of violence and hatred, and help them in a desperate last attempt to stop Hao.

His friends’ belief and the seeds of hope Yoh has sown wherever he went work as an anchor for his return, but the fight against Hao hasn’t ended yet.

Hao's, whose power is born of his invincibility alone, and Yoh's, whose power is given to him by his friends and companions, face off for the last time.

Trying to prove that Yoh Asakura, the new transfer student, can talk to spirits, thirteen-year-old Manta Oyamada (Morty) gets in trouble with the gang of Ryu of the Wooden Sword. When everything seems bound to go bad for him, however, he gets help from an unexpected source.

While looking for food in a forest, HoroHoro meets a Shaman called Allen, who uses his abilities to vandalize a company that is harming the forest.

Manta brings Yoh, Anna and Amidamaru to watch a movie about his idol, the late Kung-Fu fighter Lee Pai-Long. Things get dangerous when Lee Pai-Long's corpse attacks them, commanded by Ren's sister, Jun Tao.

Yoh's fiancée, Anna Kyoyama, arrives into town to coach Yoh for the Shaman Fight. Her methods seem abusive, but the training comes on handy when Yoh is attacked by Kyonshii commanded by the Tao family.

When Milly's Oracle Bell is stolen, Yoh and the others lend a hand to find the culprit.

Freed from his enslavement, Pai-Long goes berserk and aimlessly attacks Yoh. To fight him, Anna summons the spirit of Pai-Long's late master, Shamon.

Trying to protect Manta, Yoh pushes his friend away and returns to his grandfather's house to train for the second round. Distraught, Manta embarks in a journey with Ryu of the Wooden Sword to find his friend. On their way, they're followed by Elly and Milly, two Shamans trying to eliminate opponents before the Shaman Fight.

Yoh, Ryu, Ren and HoroHoro say goodbye to their friends and family before going to America for the second preliminary tournament. However, before they can leave, the mysterious Hao shows up to assess the group's strength.

The story of Hao and the Asakura family is revealed when Yoh's grandfather asks Anna to take the book that contains Hao's teachings to Yoh. Meanwhile, Ashiru, one of Hao's followers, challenges the group to kill Yoh's friends, not knowing that the X-Laws are about to intervene in the fight.

Yoh and the others spend the night in a Hot Spring district, only to be targeted by a rival of Sharona, who has the power of creating illusions.

The group is attacked by another of Hao’s followers, who claims to be a vampire. Meanwhile, Anna and Manta leave to America.