The annual "Clash Of The Families" is set to start and Kuzco decides to compete with Pacha's family. so he can dance with Malina at the dance at the end. However, when Pacha and his family go canoeing, there is no room for Kuzco which makes him feel like is is not wanted.

A new kid arrives at the academy. His name is Oscar and claims that he is an emperor. He adores Kuzco which makes Kuzco believe that he is Amzy in disguise, so he goes and tries to prove it.

Yzma finds out that when a student gets in trouble they get a ticket. If they have three then they are expelled. Knowing that Kuzco breaks a lot of rules, she makes Kronk an officer in order to expel Kuzco. However tables take a turn when Kronk breaks three rules and must know do what Kuzco wants or get expelled.

After getting fired for obvious reasons, Kronk moves in with Kuzco and Pacha. The entire family then warms themselves up to Kronk, much to Kuzco's jealous chagrin.

Kuzco must go back to Kindergarten in order to get his credits to graduate. However, Yzma turns hereself into a kid so she can join the class and get Kuzco kicked out.

Yzma hires an evil consultant, who ends up kicking her out of her own offices. Meanwhile, Kuzco starts to go "bad" and not listen to anyone.

After many attempts, Kuzco finally gets a real date with Malina. Then, after years of searching the Royal Matchmaker returns with a princess for Kuzco to marry. When Kuzco finds out that he can be emperor again if he marries her he agrees to marry her and blows off Malina, who doesn't take it well. After the princess rearranges the thrown room and forces Kuzco to take all these lessons, he decides he doesn't want to marry her. He then strikes up with a deal with Yzma, she’ll turn the princess into a frog, and then she gets to be empress for a day (to impress her visiting mom). However, Yzma has tricked Kuzco and she ends up empress for life. Then the princess turns back to a human negating the deal, however, Kuzco still has the ultimate decision, marry the princess, or go back to living with Pacha and go to school.

Yzma tries to trick Kuzco into thinking he saw a U.F.O.

When Kuzco's teacher goes on vacation, he thinks he has it made until he mets the substitute teacher.

In her latest attempt to take over the empire, Yzma decides to make herself the new face of the ancient Halloween...with spooky results.

Kuzco and Kronk fight over who gets to take Malina to the Masquerade Ball.

Kuzco starts to feel that everyone is annoyed by him and wishes that he wasn't there. He journeys to an ancient temple and wishes that he has never been born! After making the wish, the entire kingdom is now ruled by Yzma, under the title of \"Yzmapolis\" and no one remembers him. However, this was all a trick by Yzma who still has her memory of Kuzco. Will Kuzco regret this decision? Or will he sit back and let Yzma rule the kingdom?

Kuzco decides to ditch school for the day. However, it turns out that this will be Kuzco's tenth absence from school, meaning he will be expelled, and his chance of becoming emperor will be forever gone. Malina and Guaca then ditch school to get Kuzco back to school before the final bell. Meanwhile, Yzma learns of this and together her and Kronk try to keep Kuzco away from the school.

When Yzma gives Kronk the assignment of disintegrating Kuzco, Kronk consults his shoulder angel and devil. However, the two of them get into another fight and Kronk tells them to go away. With those two gone, Kronk can no longer make decisions. Yzma then captures his shoulder angel in a cage, and gives the shoulder devil back to Kronk. This causes Kronk to agree with everything the devil says, which causes him to try and disintegrate Kuzco.

While lost in a storm, Kuzco, Kronk, Malina, and Guaca end up lost in the woods and wind up at Mudka's #13, a supposed cursed restaurant. They decide to stay there until the rain stops, against Kuzco's will. However, soon the secret of the restaurant is revealed when Kuzco wanders into unknown parts of the building.

A charity bachelor auction is being held to raise money for charity, and Kuzco, Kronk, and Guaca will all be in it. When Kuzco insults Malina, she bids for Kronk instead to make him jealous. Kuzco then convinces Yata to bid for him to make Malina jealous. Then the four just happen to end up at the same restaurant for their dates, which turns the jealousy fest into an all out battle.

Yzma's latest scheme to destroy Kuzco backfires and gives Kuzco superpowers, such as flying and x-ray vision. Kuzco then begins to treat his friends badly. Then, Yzma decides to take matters into her own hands, and gets superpowers of her own, and vows to use them to destroy Kuzco.

When Kuzco's class visits the museum, an ancient tablet reveals that Kuzco is not the true heir to the throne, Guaca is! Guaca immediately takes over the palace and starts to treat even Kuzco unfairly. Yzma decides to take advantage of this and trick him into hiring her as his adviser, however none of her old tricks work on Guaca due to his obsession with Kuzco. Then he demands that Malina become his empress or he will build a store over her house. Kuzco and Malina then decide to seek out a special chalice that will reveal the true heir to the throne.

Malina is stressed out by the preparation for an interview for an internship at the teen magazine Incan Teen. She asks Kronk and Kuzco for help and they decide to teach her how to relax properly.

Kuzco fakes a termite infection in Pacha's hut to get the permission to live in the palace. Unfortunately Pacha's family and later the whole village move into the now overcrowded palace and Kuzco has to handle all his guests. In the meantime, Yzma uses Kuzco's presence in the palace to try and destroy him and sets up several traps.

Yzma's latest destroy Kuzco scheme may be the best one yet. After realizing that Kuzco pays more attention to girls then school, she has Kronk trick him into taking a potion which makes girls, including Malina, attracted to him. The girls then begin chasing him everywhere, which is more then Kuzco can deal with.

Kronk and Kuzco team up together for their school assignment and open a spinach puff stand. Although Kronk's puffs are a great success Kuzco takes over the team and turns the puff stand into a industrialized restaurant. Finally Kronk quits due to Kuzco's treatment opening his stand again while Kuzco ruins his restaurant.

Yzma has to take her annual royal adviser review and fails because she never advised Kuzco in the last year. She is replaced by Obsessia, a change Kuzco is at first pleased with but shortly her overbearing turns up to be worse then Yzma's plots. Unfortunately, Amzy got fired too and so Yzma left after her unsuccessful efforts to find another job. Kuzco and Kronk follow her to convince the former adviser and hire her back.

Yzma leaves for a week to pursue her dream of stardom. Since she can not trust Kronk to keep track of things, she leaves a robot version of herself to take care of things. When Kuzco turns his homework in late, he finds out that he can get Mr. Moleguaco to look at it if the principal tells him to, so he tries to get Yzbot from Kronk.

When Kuzco is attacked by pumas, Pacha saves him, and Kuzco thinks it is because of his amazing dodging skills. When he brags about it at school, Guaca arranges a puma wrestling match for him, but will he be revealed a phony?