The annual "Clash Of The Families" is set to start and Kuzco decides to compete with Pacha's family. so he can dance with Malina at the dance at the end. However, when Pacha and his family go canoeing, there is no room for Kuzco which makes him feel like is is not wanted.

A new kid arrives at the academy. His name is Oscar and claims that he is an emperor. He adores Kuzco which makes Kuzco believe that he is Amzy in disguise, so he goes and tries to prove it.

Yzma finds out that when a student gets in trouble they get a ticket. If they have three then they are expelled. Knowing that Kuzco breaks a lot of rules, she makes Kronk an officer in order to expel Kuzco. However tables take a turn when Kronk breaks three rules and must know do what Kuzco wants or get expelled.

After getting fired for obvious reasons, Kronk moves in with Kuzco and Pacha. The entire family then warms themselves up to Kronk, much to Kuzco's jealous chagrin.

After many attempts, Kuzco finally gets a real date with Malina. Then, after years of searching the Royal Matchmaker returns with a princess for Kuzco to marry. When Kuzco finds out that he can be emperor again if he marries her he agrees to marry her and blows off Malina, who doesn't take it well. After the princess rearranges the thrown room and forces Kuzco to take all these lessons, he decides he doesn't want to marry her. He then strikes up with a deal with Yzma, she’ll turn the princess into a frog, and then she gets to be empress for a day (to impress her visiting mom). However, Yzma has tricked Kuzco and she ends up empress for life. Then the princess turns back to a human negating the deal, however, Kuzco still has the ultimate decision, marry the princess, or go back to living with Pacha and go to school.

Yzma tries to trick Kuzco into thinking he saw a U.F.O.

When Kuzco's teacher goes on vacation, he thinks he has it made until he mets the substitute teacher.

In her latest attempt to take over the empire, Yzma decides to make herself the new face of the ancient Halloween...with spooky results.

Kuzco and Kronk fight over who gets to take Malina to the Masquerade Ball.

Kuzco starts to feel that everyone is annoyed by him and wishes that he wasn't there. He journeys to an ancient temple and wishes that he has never been born! After making the wish, the entire kingdom is now ruled by Yzma, under the title of \"Yzmapolis\" and no one remembers him. However, this was all a trick by Yzma who still has her memory of Kuzco. Will Kuzco regret this decision? Or will he sit back and let Yzma rule the kingdom?

As Kuzco prepares to graduate, he must watch a Emperor orientation video. The video makes him question whether or not he can lead his people and if he really wants to become the Emperor again. Yzma, needing to make a last-ditch effort to prevent his graduation, decides to prey upon Kuzco's new insecurity. She gives him a potion that will turn him into a chicken forever. He decides to take it, and runs away and accidentally winds up in a Mudka's meat mug manufacturing plant. With Yzma becoming Empress inevitable, Kronk and Malina must find Kuzco and turn him back into a human so he can become Emperor.

When Kuzco gets bored with school paper that Malina helps to make, he replaces her and makes his own all about him and untrue stories, thus turning it into a tabloid.

When Kuzco creates Kuzco Allegiance Day, Mr. Moleguaco assigns a class project where one student is emperor for a day. So Malina is chosen to randomly draw who will the emperor. When Kronk is chosen as the emperor for a day, it teaches Kuzco that being a peasant is harder than it looks. But when Yzma finds out that Kronk is emperor, he has Kronk tell Kuzco and the rest of the students that they have to bow down to him. However, Kronk fires Yzma. So she helps Kuzco and Malina wear down Kronk with the one thing an emperor hates the most.

When Kuzco refuses to leave the mall, he gets into a chase with Officer Achamare and gets him fired. Since the mall needs security Kuzco is forced to do it. When the mall gets out of control, Kuzco tries to get Officer Achamare his job back. Meanwhile, Yzma and Kronk plan to break into Kuzco's money vault.

Kuzco faces his first threat of losing his position as Emperor when he struggles in P.E. and his teacher threatens to flunk him if he can't win a race with Kronk. However, Principal Amzy (who is really Yzma) tells Kronk to turn Kuzco into a turtle so he has no chance of beating Kronk, but instead, Kronk gives Kuzco the wrong potion and he ends up as a rabbit.

After failing his "squirrel speak" quiz, Kuzco is forced to get tutored by Bucky the Squirrel, whom he really dislikes.

Malina is supposed to be Kuzco's date for the Kuzcoteque, but he can't get past a tiny zit on her nose. When he tries to use one of Yzma’s potions to get rid of the zit, it ends up giving her the beak of a bird!

Pacha and Chicha decide to go to a spa for their wedding anniversary. Since no one else is able to babysit they ask Kuzco. Kuzco agrees, but only because he wants alone time with Malina. Then, while Kuzco thinks they are sleeping they disappear! They have gone off to find the spa and give their parents their gift. Kuzco and Malina search for them, but the kids end up in Yzma’s lab!

Everyone is told to write a paper on their best friends. Kuzco, who doesn’t have any real friends, makes his person up. Then, we he is told to bring this person in, someone exactly like him does show up! What Kuzco doesn’t’ know, is that it is a clone made by Yzma.

Kuzco, Kronk and Malina are given a class assignment that involves their survival skills. They are forced to stay overnight in the wilderness without anyone or anything. Just when they finally get there camp set up, Kuzco accidentally gets it destroyed.

Kuzco teases a student named Kavo thinking he is just joking around. Kavo, who gets mad about it, decides to beat Kuzco up. Kuzco then hides all over the school and even turns himself into a cat to avoid Kavo.

Kuzco invites Malina, Kronk, Yata, and Guaca over to play games, where they discover Guaca's \"fear\" of drawing. His father wants him to be an artist, so he entered him in the art competition to be held the next day. Kuzco hates seeing Guaca so depressed (since he keeps spilling his drinks), so he sneaks into Yzma's lab to find a painting potion. When it turns out that Yzma used the last one, Kuzco must make another one. When he goes to test it at the art fair, his pterodactyl drawing comes to life and takes Guaca's father for a ride! Now it is up to Guaca to save his dad.

Kuzco is having trouble with his knot tieing homework. He decides to steal Chaca’s. Meanwhile, Yzma turns Kronk into a Llama, who takes the homework and runs off.

In Home Economics class, everyone is given a kitten to take care of for a week. Once again, Yzma tries to make him fail by turning the kitten into a jaguar.

After a mask is stolen, Yzma wants to blame Kuzco for taking it. Kuzco, Malina, Kronk, Yzma, and the Security Camera all tell their side of the story. That is, until Pacha tells them the truth.