Mashiro and Takagi both decide to rewrite their manga. Fukuda, Aoki and Nakai also rewrite their manga. Later Fukuda's manga is shown first with positive reviews. Next Mashiro and Takagi's manga is also shown with good reviews. Nakai panics and thinks that when Nizuma said that the winners were tied and there was a third place, he meant his manga. Then Aoki and Nakai's manga is shown with also positive reviews. All three series are okayed to begin work on names for serialization. Azuki said that she liked Mashiro and Takagi's manga, which gives Mashiro hope.

Thirteen series are submitted for the serialization meeting and are discussed by the team captains, editor in chief and deputy editor. Of all 13, Detective Trap and Otter 11, a manga by newcomer Kazuya Hiramaru, are chosen for serialization. Mashiro receives congratulations from his rivals, who promise to get serialized themselves to compete with him. Mashiro then reflects on how far he has come and how far he has yet to go, before he receives a call from Azuki, who congratulates him and tells him that their dream will come true. Hattori stops by with a man called Miura, who will be their new editor.

Mashiro changes the character design while Takagi struggles with naming the 3 characters and a possible new title. Orihara comes back as assistant + 2 new ones: Moriya and Shiratori. Those 2 argue if sales or treating it like an art is better for a manga. Mashiro tells them he and Takagi draw with sales in their minds, because they're not yet good enough to draw something that has true cultural value, saying that everyone should draw the way they want to. Takagi decides on the title; "Perfect Crime Party", aka "PCP". Meanwhile Fukuda is working on Road Racer Buchigiri. Everyone is curious how the votes will be with PCP as a story based manga against the intense and flashy Road Racer. In the end "Perfect Crime Party" gets 1st place and gets a total of 422 votes, amazing the editors because CROW "only" got 401 and +Natural 310 votes on their first chapter. The achievement is especially good since CROW didn't have a one shot like Road Racer to compete with at the time. Fukuda's Road Racer gets serialized too. Hearing +Natural dropped to the 8th place, Iwase gets fired up, as does Niizuma. At the end Mashiro, Takagi and Hattori visit Mashiro uncle's grave. Mashiro tells him he finally got 1st place and we see his uncle 'answering' that it should be a given and that when he truly becomes number one, he should come back again, but he smiles proudly.

Miura reads the storyboard for the new manga Perfect Crime Club and approves of it. Takamta also reads the storyboard, admitting theirs is a lot better compared to his, leaving Mashiro and Takagi more confident about their new manga. They celebrate Christmas with Miyoshi but are still anxious about the meeting, deciding that if they don't make it they will continue being manga artists for another magazine. In the serialization meeting everyone seems to be positive about Perfect Crime Club but the chief editor asks them if it could seriously compete with CROW and +Natural. In the end he suggest they vote if the manga should be serialized, and the episode ends with the negative result 4–3 against the serialization...

Mashiro and Takagi meet with Akira Hattori, one of the editors at Shonen Jack. He notes that their work has flaws, as it is too text-driven and not drawn in manga style, but they have potential. He tells them that they are better suited to figuring out what could be a hit and drawing that, rather than drawing what they want, and while they are less likely to get a smash hit with that skillset, they are more likely to follow up on one if they do. Hattori gives them his contact information, encouraging them to come to him with their work. At school, the teacher decides to seat boys and girls next to each other, resulting in Mashiro sitting next to Azuki.

Takagi comes up with some more ideas, including One Hundred Millionth, a story about people being ranked according to their abilities, and Hattori is impressed with the story, causing Mashiro to wonder if his art is good enough. The story is chosen as one of the finalists, but does not make it to the four chosen for the award or honorable mentions. Shortly afterward, Ishizawa, a classmate, claims that Mashiro's art is holding Takagi down. Takagi gets angry and punches Ishizawa.

Mashiro has come to the conclusion that doing mainstream battle manga is the way forward, and draws characters from other battle manga to polish his skills at drawing this type of manga, Meanwhile Nizuma's manga "Yellow Hit" is on the verge of being serialized, but Nizuma's editor learns that he is planning on submitting "Crow" instead, and brings him down to the editorial offices. At the same time, Mashiro and Takagi are meeting with Hattori, who tells them that they are not suited to mainstream manga and that the mainstream authors who are popular are considerably more talented. Nizuma meets Mashiro and Takagi, telling them that he liked Money And Intelligence and wants to be friends with them, before drawing a name in front of them. Hattori hopes that demonstration will convince them that they're not able to compete with him in mainstream manga, but they remain determined to do so, and he gives them six months to submit a good mainstream work before he steps down as their editor.

Mashiro starts work as an assistant for Nizuma, and meets the other two assistants; Shinta Fukuda, who had placed lower than he did in NEXT, and Takurō Nakai, who won an award 10 years ago, but has been unable to accomplish anything noteworthy since then. Despite Fukuda and Nizuma questioning why he is working as an assistant instead of trying to get published, Mashiro is determined to learn what he can to help Takagi. Fukuda realizes that "Crow" will eventually get canceled after the novelty wears off if Nizuma does not make it more substantial and interesting. Nizuma adjusts the story accordingly, while also deciding to meet with his editor.

In the end Mashiro faints and is hospitalized, but he refuses to stop drawing even in his current condition. Despite Mashiro and Takagi's wish to continue, TRAP is put on hiatus. Azuki visits Mashiro in the hospital. She talks about how she liked him ever since she was a child and they talks about a special day at the pool during middle school. While Mashiro is convinced he can continue to draw, but Takagi is hesitating because of his current condition. In the end, Azuki is the one who supports Mashiro to do what he really wants to do, surprising Takagi and Miura by her decision.

The team's newest work "Stopper of Magma" is rejected without consideration for serialization. Miura reveals he has been receiving advice from Hattori, who suggests they draw a serious comedy. Muto Ashirogi follow Hattori for inspiration, and develop the idea for their last chance manga.

Mashiro and Takagi meet with Hattori, who says the manga artists liked their work, but the editors judging it thought it would never be published. Mashiro, wanting to progress faster than he is now, wonders if he could submit a work for serialization, and Hattori is doubtful. The editor in chief says that work needs to be good to be serialized, but Mashiro and Takagi are not good enough yet, and need a good main character to do so. Their early attempts are unimpressive, but Hattori suggests that a cult hit that only 20 percent of the reader base would read, but consider their favorite, might be a way for Mashiro and Takagi to get first place. Takagi mentions an idea he has called Money and Intelligence, in which people sell the contents of their minds to others, and Hattori suggests that they work on it.

Mashiro and Takagi work on Money and Intelligence while applying to the relatively easy North High School. Miyoshi questions why Mashiro and Azuki are not seeing each other, and Takagi concludes that Azuki wants to remain focused on her dream. Mashiro and Takagi get accepted into North High School along with Miyoshi and learn that their work will run in the seasonal magazine NEXT. Hattori tells them that the editors are planning to use them to make Nizuma look good by comparison, but he tells them this is their chance to impress them and win against Nizuma.

Mashiro and Takagi, incorporating Hattori's suggestions, comes up with a concept for a story about an angel fighting other angels who kill humans to advance themselves, but are frustrated at their lack of progress. The name is rejected, but the feedback notes that they have promise. Around this time, Takagi is struggling to think of another idea, and begins seeing Miyoshi more often, prompting Mashiro to wonder if he is working on it at all. Hattori learns that Nizuma needs an assistant and that Takagi would not stop Mashiro from going to work for him. Mashiro hears of the offer, and is hesitant to accept it until he happens upon Takagi kissing Miyoshi.

Team Fukuda reaches the editorial offices, but despite their protests, the editors do not believe Koogy's advantage is unfair or his tactics are unethical, and Mashiro decides to defeat him by making a better manga. Fukuda then proposes that the authors check each other's names, and they are surprised by each other's level of skill. Midway through the session, Aoki refuses to continue to participate, saying that her manga is better than the others, and the session ends with Nizuma says two of the manga are significantly better than the third, but declining to specify. Mashiro then ponders rewriting the name in the face of his competiton, and after getting an email from Miho discussing her doing singing again and her becoming more confident, decides to do so.

In the end TRAP resumes publication, but is struggling with low rankings. Takagi tries to put some ideas based on fan mails in the name but Miura tells him he can't use whatever idea and add it to the story, because then it wouldn't be their manga anymore. Meanwhile, Azuki gets more and more popular, getting a semi-regular role in an anime. In the end TRAP is ultimately cancelled due to the low rankings, together with Aoki's & Nakai's Hideout Door. Mashiro and Takagi finish TRAP and are frustrated they weren't able to do better and realize they won't be able to get an anime before they're 18. Mashiro tells Azuki about this and she tells him she'll wait for him forever but would like to get married by the time she's 40. Not wanting to make Azuki wait that long, Mashiro and Takagi get fired up again to do their best with their next manga.

Editor Oonishi, changes his vote to be positive, stating it's ridiculous to let Ashirogi Muto go because of this voting. The vice chief editor also changes his vote, stating they should leave it up to the readers to decide this matter. In the end the manga gets serialized. Mashiro, Takagi and Miyoshi receive the good news and eat home made cake from Azuki. They find a USB in the cake and listen to her special recorded Christmas carol. Mashiro and Takagi's editor changes again but it turns out to be Hattori, while Miura becomes the editor for +Natural. Hattori tells them about the initial voting result, triggering a brainstorm session where they discuss what they should change to make the manga even better. Hattori thinks it's Niizuma's 'expressiveness' that makes his manga so good but Mashiro changes it to 'imagination'. Mashiro decides to, just like Niizuma, draw the manga based on only Takagi's script (instead of his storyboards), giving him more freedom to draw the panels as he wants. Both of them start to rewrite the storyboard. Meanwhile Fukuda tells his editor he's working on a one shot, saying he doesn't want to lose against Niizuma and Ashirogi Muto.

Recalling when he and Azuki turned back to look at each other at the same time, Mashiro tells Takagi that he and Azuki have been on the same frequency for years, indicating that they are connected without having to say anything about it. Azuki's best friend Kaya Miyoshi goes to Takagi to complain about him telling Azuki about her dream, and as she does so, gives indications of romantic interest in Takagi that Mashiro and Miyoshi notice. During the summer, Mashiro and Takagi stay at Mashiro's uncle's office, and work on a manga called The Two Earths. When it is complete, they call the Shonen Jack editorial department.

Mashiro and Takagi discuss how to improve the concept behind the story, now known as Detective Trap, and Takagi begins looking over many detective stories that Hattori sent him. The two meet with Hattori, insisting on proceeding with Detective Trap while still in high school, and Hattori tells them that in order to get serialized, Detective Trap must do well in the Golden Cup, and they must bring him a 19-page story every two weeks to show that they can do so every week with assistants. They succeed in keeping up in spite of the difficulty involved in doing so, and are officially entered into the contest.

Mashiro and Takagi continue submitting a story every two weeks, with Mashiro sacrificing sleep to do so, but they have several weeks to go. They see Nakai with Ko Aoki, the runner-up of the Story King competition. Nakai reveals that he's entering- with her, and that Fukuda's entry is expected to place first. Hattori reveals that Muto Ashirogi's work has gotten into the Golden Future Cup, and while the rank influences how it will fare, so will the number of people who voted that they liked it. One of their rivals is Koji "Koogy" Makaino, a popular musician who wishes to become a mangaka, and Fukuda believes that his fans will give him an unfair advantage in the questionnaires. Fukuda, Nakai, Mashiro and Takagi then go to the editorial offices to protest this.

Koogy's manga does poorly in the Golden Future Cup, leaving Mashiro and Takagi, Fukuda, and Nakai and Aoki as the top contenders. An unprecedented two-way tie happens, with Fukuda and Ashirogi Muto both getting first place. Azuki calls Takagi to thank him for supporting Mashiro and encouraging him to pursue becoming a manga artist, but is too embarrassed to congratulate Mashiro directly herself. Having won the Golden Future Cup, Mashiro and Takagi prepare to submit their story for serialization.

The story picks up directly where the Season 1 finale episode left, introducing Miura as Moritaka and Takagi's new editor and introducing the genius, yet extremely lazy ex-salary man, Hiramaru at the New Year's Party.

Both Ashirogi Mutos' one shots Future Watch and Hitman 10 are well received by the editorial staff. The chief decides to run both as one-shots, wanting to see the public reaction before making a decision on a possible serialization. Mashiro and Takagi aren't sure about their new editor and his skills and this gets worse when Takahama calls them because his manga Business Boy Kenichi ranked 6th as serie while it got 2nd place as one-shot, telling them not to listen to Miura too much and do things in their won style because taking Miura's advise made him fall down in the rankings. In the end Hitman 10 ranks 10th, while Future Watch ranks 9th.

Moritaka Mashiro, an average student with a talent for drawing, forgets his notebook at school, where his classmate Akito Takagi finds and looks through it. Takagi likes his drawings and asks Mashiro to team up with him to create a best-selling manga. Mashiro refuses because his uncle was a manga artist until he died from overworking, while deeply in debt, which derails his dream. Takagi soon invites him to visit Miho Azuki, the girl Mashiro has an unrequited crush on, and Takagi tells her of his plan to create a manga that will become an anime, in which she will play the heroine. Mashiro also proposes to marry Azuki when both their dreams come true, and she agrees that they will, but shall not see each other until then. With this motivation, Mashiro decides to become a manga artist.

Mashiro chats with Takagi, who tells him that he chose Mashiro because he is smarter than many of his peers in matters outside of scholarship, and that he believes Azuki has a similar kind of intelligence, with the ability to be appealing to others. Mashiro tells Takagi that he believes his uncle committed suicide, and thus suspects that his parents will oppose him becoming a manga artist. Mashiro's mother says his uncle did not commit suicide, but still opposes his decision until his father and grandfather show support for his dream. Mashiro's grandfather gives him his deceased uncle's studio apartment, and Mashiro brings Takagi to see it.

Mashiro, at Miyoshi's suggestion, sends an email to Azuki to begin correspondence with her. During the first day of high school, Mashiro and Takagi submit their new pseudonym, "Muto Ashirogi". Hattori is impressed with their work, but Mashiro notices that he is not expecting Money and Intelligence to be serialized, wondering if it is because of his desire that they wait until after high school to get serialized. Money And Intelligence gets first place in the early results of the NEXT polls, but drops to third place in the actual results, with Nizuma's work getting half the votes. This development convinces Mashiro and Takagi that they must make a mainstream work to go for first place, and resolve to make one better than their previous efforts.