After the president of the NY Fed is gunned down trying to help a young woman in peril, the team races to find the killer and the missing woman. Additionally, a distressing connection to one of Jubal’s past cases is revealed during the investigation, compounding the pressure on him as he also deals with his son’s school suspension.

When a local club owner is found dead, the team works quickly to find the motive behind the murder of a seemingly innocent man. Meanwhile, OA is smitten with a new love interest but is concerned that she's mixed up with the wrong crowd.

When a federal judge is gunned down execution-style in broad daylight, the team is sent looking for a suspect with ties to a local Islamic center. Also, Maggie reunites with a former colleague while things become tense between OA and his girlfriend Gemma.

When the director of a Brooklyn migrant center is abducted and held hostage along with his wife, the team must work quickly to meet the demands of their kidnapper. Also, Maggie picks Jessica's brain about motherhood.

After multiple people are targeted and killed with a poisonous gas in broad daylight, the team races to find the killer, who they believe is tied to an eco-terrorist plot. Meanwhile, Maggie continues to explore motherhood.

When a bombing at a local restaurant leaves several injured or dead, including a congresswoman and someone close to Isobel, the team races to apprehend the suspect before another explosive goes off.

When a retired FBI agent is tortured and killed while working a security job, Scola and Nina go undercover as a married couple deep in the diamond game as the team tries to find out who is responsible. During the course of his and Nina's dangerous assignment, Scola is plagued by the possibility that their son Doug could end up parentless.

After an FDIC security guard is killed while tending to a pregnant woman in distress, the team works to locate the woman and the killer who took her hostage. Meanwhile, OA and Isobel worry about Maggie as she navigates taking care of Ella.

The team is thrown into a highly political case after four members of the Taliban are shot and one is kidnapped in New York with no record of their entrance into the country. Having served in the U.S. Army, this case hits close to home for OA, who struggles to open up to Gemma about his past in Afghanistan.

A woman with information about the death of Maggie’s husband is abducted, leading OA and the team to uncover a criminal operation larger than anyone imagined. Also, Dana puts her career in jeopardy when she stands by and allows Maggie to work on this case that has such a personal connection to her.

The team must track down two assailants who wear animal masks while committing armed robberies, with the latest leaving an off-duty 26 Fed security guard dead. Also, Tiffany and Scola butt heads on whether or not to accept the local NYPD’s offer to help in the investigation.

The team rushes to track down two doctors abducted by a desperate father willing to do anything to save his son. Also, Jubal's uncertainty in his family life affects his judgement during the hostage situation.

After a young woman is killed on her way home from a lavish yacht party, the team investigates who she was and how she came to be at the event, which was attended by some of the most influential people in the world. Also, Maggie brings Crosby into the investigation after a murder suspect is identified as a veteran who had been on several Army operations with Crosby. The crossover continues on FBI: Most Wanted S03E01 Exposed (II) and FBI: International S01E01 Pilot (III).

After Jubal narrowly escapes a calculated assault on a secret FBI office, the team discovers a rogue terrorist group has infiltrated the FBI. Unsure of who to trust, the team must work in the shadows to unmask the culprits threatening the sanctity of the New York field office.

An American diplomat is killed while being used as a pawn in a dangerous drug ring, and the team must work together to bring them down. Also, Jubal and OA try to help friends from their past fight off their inner demons.

When a controversial senior leader from Egypt comes to New York for a heart transplant, OA struggles to balance his personal opinion with his professional duty when he is assigned to the security detail.

After a decorated FBI agent is murdered, the team investigates and uncovers the man led a double life. Also, Maggie struggles with what information she should reveal to the agent’s widow, who is also her personal friend.

While investigating a mass casualty incident at a New York City restaurant, the team scrambles to determine if it was racially motivated and if there was more than one gunman. Also, Maggie starts to notice troubling behavior from her co-worker, Elise.

When a truck driver is murdered and the drug he was transporting goes missing, the team hunts for those behind the remaining batch that is already wreaking havoc on the streets of New York.

The Somalian terrorist group behind the death of Agent Hobbs resurfaces, sending the team on a chase to take them down for good.

When an alt-right provocateur is murdered after giving a speech at a university in New York City, Maggie and OA investigate the school's more extreme political groups and rely on OA's sister, Amira, a student, for help.

Maggie, OA and the team must stop a hacker who is disabling life-saving equipment in several New York City hospitals. Jubal's son waits for important surgery at one of the impacted hospitals.

OA is forced to confront one of his biggest fears when the team discovers that deadly sarin gas may have been sold to terrorists.

The murder of a TSA agent leads the team to hunt down a killer who is using drug mules to exploit airport security checkpoints. Also, OA struggles to cope with the aftermath of the sarin gas exposure and the 10th anniversary of his army friend's death in Afghanistan.

The team welcomes a new member, Special Agent Tiffany Wallace, as they search for killers who orchestrated a mass shooting at a media company, and OA’s personal connection with the case threatens to cloud his judgement.