An intercepted shipment of cloned hands being sent to the orbital platform has the Phantom intrigued and sends him on a space-hunt as the orbital platforms vote on whether to form their Free Orbital Nation.

When Sagan digs into the mystery of the Phantom's identity, she uncovers an old associate of the Phantom from 20 years ago. Unfortunately, her search has been tailed - now, can that associate protect both himself and the Phantom from Graft's overeager crew?

The truth behind the origins of Cairo and the contents of the train wreck that destroyed Sector Zero may destroy the Phantom and his friends -- one way, or another.

Fissures in Gorda and Rebecca's ""partnership"" provide an exploitable weakness - but who is exploiting it, and why?

Kit's continuing search for a way to save his father leads to some interesting revelations about Max Madison Sr., Mr. Cairo, and the 23rd Phantom, and puts Cairo in the worst danger he's ever encountered. Meanwhile, the Madisons and Gorda continue wreaking havoc while Rebecca attempts to put a ""positive spin"" on their scheming.

Sean 1 of the orbital platform is close to achieving his dream of acquiring enough power to enforce a declaration of independence. Will Graft and the Phantom team up to stop him from destroying Metropia and part of the world in his quest for a Free Orbital Nation?

The Phantom learns the meaning of his Good Mark and, in the course of a plot by Maximum to lure the Phantom into a trap, ends up marking Sagan with it.

Once and for all we finally experience the whole truth about the night the train wreck ruined Grand Central Station and the Phantom and Max Madison Sr. were killed - from no less a source than Max Madison, Sr. himself.

Kit and his friends return to his lair and find the mysterious message left by Kit's father, as the Madisons scheme to escape the dome with the assistance of Gorda (who may or may not be helping...). However, when Kit has to choose between the life of a person he loves and the life of Metropia itself, how does he decide?

When the Phantom stops a crime in progress, the criminal surprises the Phantom with an unexpected sigil, and leads Kit into the first-ever ""Virtual Reality"" excursion into the Phantom Chronicles, where he enters and interacts with and changes an action-filled story of the 20th Phantom.

A new member joins the team - a superhacker kid named Sparks, and just in time to ""skate"" the Integrated Cyber Environment and meet the mysterious entity known only as Cairo.

A ""retrospective"" show, bringing you up-to-date on the goings-on in season 1.

The origin of the 24th Phantom, as he is called into service on his 18th birthday, unaware of his family's history.

A message from the Phantom of 2157 sent back to the Phantom of 2040 leads Kit to some surprising clues and faces him with a difficult choice: whether to continue the Phantom's code against killing, even in the face of the inevitable destruction of the Earth.

Having been convinced by his friend Guran to go to Africa, his ancestral home, Kit finds deeper truth than even he imagined in the Phantom's fight for justice through the ages. Meanwhile, the truth behind Max Madison, Sr.'s original plan and the cause of the train wreck are revealed and lead to a shocking conclusion -- and the beginning of the Maximum Era.

The origin of the 24th Phantom, as he is called into service on his 18th birthday, unaware of his family's history.

Maximum Inc's latest innovation is a virtual theme park featuring the rock star Vaingloria. But when three people seem to be taken over by a strange psychic force, their combined might may be too much for Metropia, so the police decide they need the Phantom's help - and offer him absolution if he solves the case. And the liason the police choose to work with the Phantom? Why, Sagan, of course

Heisenberg returns to warn the Phantom of a danger to both biots and humans deep inside Cyberville. But why would anyone care about the destruction of biots, even Heisenberg? After all, they're not alive... are they?

Kit's investigation into the dissemination of a new drug leads him to the athletes at his own college, where his friends confront him about his strange behavior and evasive secrecy.

Heisenberg is branded a rogue biot after Dr. Jak records a secret gathering of his fellow self-aware biots and claims that they are planning a revolt. The Enforcers ask Maxwell Jr. to assist them in hunting Heisenberg down, unaware that he intends to retake control of the biot for himself.

The mystery of Sparks' missing parents is finally solved, during an adventure with a new security system at Cyberville

The further adventures of Heisenberg the fractal biot, as he explores the concept of ""feelings"", and Dr. Jak has to do without his biot assistant for a while.

Maximum's new invention, the fractal (shape-changing) biot is part of a new plot to capture the Phantom. Meanwhile, Professor Archer finds out about Kit's dual identity.

The story behind the rock star, Vaingloria, is revealed during an adventure involving kidnapped teens.

With the aid of Australian crime boss Gorda, raids Maximum cargo ships to obtain chemicals needed for his Damocles Platform, a deadly orbital laser cannon he plans to use to force the Earth into recognizing the independence of the Orbital Colonies.