Kamui has been hiding in plain sight using Holos that take the form of dead people aged up, which makes Akane realize that his actions have been planned in great detail. Meanwhile, Mika closes in on the truth about Kamui and submits a report to Kasei.

An Enforcer from Division 2 was executed by a Dominator and an Inspector from the same division has gone missing. The only clue they have is the mysterious message “WC?” left at the crime scene. But who could commit a crime without being detected?

Right before Kitazawa was executed, he mentioned the name of someone who had supposedly been helping him. While others just think that he was crazy, Akane wants to get to the bottom of this case and tries to seek out help from someone.

A man occupies a mental care facility and starts acting violent, but Inspector Aoyanagi’s Dominator does not consider him a threat. As the Area Stress Level rises, Division 3 takes over the case and brings in a new armament to deal with the situation.

The MSPWB has identified a possible hiding place for Kamui, and Divisions 1 and 3 are sent to the scene in order to investigate. Meanwhile, Akane has Saiga help with Representative Masuda’s interrogation.

The Military Drones hunt down the MWPSB detectives. While attempting to evacuate the detectives, Akane realizes what Kamui’s true objective is. Meanwhile, the Analysis Lab rushes to track down and deactivate the program that hacked the Drones.

A series of bombings takes place in Tokyo. After some analysis, the detectives figure out who the culprit is and his whereabouts, and head to his location. Akane wants to be cautious, but the other Inspectors decide to rush in, and...

Unit One has begun to grasp the truth behind the incidents following each other like a line of falling dominoes and team up with the SAD to continue their investigation. Arata guards the governor, who is at risk of being targeted again, while Kei organizes a sting using Kisaragi as bait. When he arrives at the appointed meeting place, however, he finds Shizuka Homura waiting for him.

Multiple Dominators were stolen by Kamui during the massacre caused by the Military Drones. Who does he intend to use those Dominators on? And why hasn’t the Sibyl System taken any action to deactivate them? Akane goes to see Kasei to get answers.

A Special Religious Zone is established, where immigrants can practice religion freely. Religious leaders gather for a press event in Mitake New Town, the site of the Special Zone, but the venue becomes the target of a terrorist attack by a suicide bomber with explosives implanted in his stomach. Unit One starts investigating the anti-special-zone faction.

Arata and the others have just learned that there are three more human bombs when a third suicide bombing in New Town’s factory district takes Joseph Auma’s life. Meanwhile, Kei and Kisaragi have infiltrated Heaven’s Leap in search of clues to the terrorist serial bombings. They discover proof they’re looking for, but find themselves exposed and taken captive.

Tokyo, 2120. A massive transport drone crashes, and Unit One’s new inspectors Arata Shindo and Kei Mikhail Ignatov head to investigate. Discovering that Hyper Transport Co. accountant Asahi Rick Fellows is missing, Arata performs a Mental Trace to track him, but finds only his waterlogged corpse. Arata and Kei suspect the crash was staged, and pursue the mastermind who tried to silence Rick.

Freelance journalist Yayoi Kunizuka joins Unit One as an investigation consultant to fill the gap left by Kei’s suspension. As the investigation progresses, Unit One uncovers Karina Komiya’s greatest secret. Guessing that Karina will be the next to be attacked, they rush to her gubernatorial debate at the Giga Arena.

After realizing that the recent murders and the Specimen Case are indeed connected, Ginoza takes Kogami off the case and requests Tsunemori to watch over him. Tsunemori discusses Sasayama's murder with Kogami, and he gives her his one piece of evidence: a blurry image of Makishima. Meanwhile, Makishima, in a study with another older man, reveals the circumstances of Rikako Oryo's father's death and discusses the nature of the shortening life expectancy in this "perfect" world. Later, Rikako continues her crimes with the help of Makishima's colleague, Choe Gu-Sung, and abducts another fellow student who is worried about her friend's disappearance.

Through a Mental Trace, Arata discovers that the supposedly-dead Kurisu is alive and uncovers the truth behind the terrorist bombings. Shimotsuki, meanwhile, has launched a forced search of Heaven’s Leap and brought Unit Two to locate Kei. Torri, cornered, takes Maiko hostage and confronts Kei, but Maiko takes advantage of a momentary opening to end his life.

Ginoza meets up with the head of the Public Security Bureau about Makishima, who confidentially reveals to him about the real culprit of the Specimen Case, Touma Kouzoburou, three years ago who happens to be "criminally asymptomatic" just like Makishima. She urges him to keep any doubts away from the public eye and orders him to capture Makishima. Following Yuki's funeral, Akane agrees to undergo a 'Memory Scoop' to provide a photofit of Makishima based on her memories of the incident, despite warnings from others that it may damage her Psycho-Pass. Despite reliving the traumatizing memory, the Memory Scoop is successfully completed without her Psycho-Pass reaching into dangerous levels, providing a photofit image of Makishima to aid in the investigation. Later, Ginoza discusses with Masaoka, who is actually his father, about how Akane manages to keep her Psycho-Pass from becoming unclouded.

As footage of the helmet killings appear on the internet, the helmets are distributed to more criminals who begin committing more horrendous crimes out in the open, prompting bloodthirsty revenge from the public in the name of self-defense. As the MWSPB are sent in to suppress the riots, Kogami deduces that the riots are intended to draw the police away from the Health and Welfare Ministry's Nona Tower facility, where the Sibyl System is located. As Makishima and his gang break in, Kogami, Akane and Shuusei head to the scene.

In a world where minds can be analysed for potential threats of crime and mental instability, Inspector Tsunemori Akane is sent to deal with her first case, along with fellow inspector Ginoza and a group of Enforcers, latent criminals hired by the police to work for them. Akane’s case deals with an insane man who has taken a woman hostage and raped her, holing himself up in a building inhabited by groups of the homeless.

While Kogami is recuperating from Akane’s Paralyzer shot, she begins to worry about whether she is suited to be an Inspector after the fallout from her first case. On her second day on the job, she begins to learn more about the Enforcers she works with.

After figuring out who Sakuya Togane really is, Inspector Shimotsuki also learns the truth about the Sibyl System. In the meantime, Kamui and his accomplices are moving forward with their plan using the Dominators he took from the MWPSB.

The ghost has revealed himself and taken action. Kamui and his group take over five hundred passengers in subway trains as hostages and start shooting them randomly with Dominators. What are they trying to accomplish? What is the MWPSB’s next move?

After meeting Karina Komiya face-to-face, Arata senses something unfathomable from her, but can’t find a clue to the case. Then Lee Aki, the secretary of her opponent, Kosuke "Heracles" Yakushiji, is murdered. Unit One decides to split up to investigate both the attackers and their victims, but…

The CID’s hunt for Kimihiko Hayama’s killer leads them to another murder with the same modus operandi. Now it’s up to the CID to figure out how to track down the killer’s real identity and get justice for the victims.

With a drone delivering him a Dominator, Kogami manages to outwit Senguji and kill him, although he also takes some shots in the process. Just then, Yuki is captured by Makishima, with Kogami too weak to follow. As Masaoka tends to Kogami's injuries, Tsunemori goes alone to pursue Makishima. To her shock, she discovers her Dominator is useless against him as his Crime Coefficent levels are too low, with Makishima attributing his murderous intent to his own free will. He gives Tsunemori the opportunity to try killing him with Senguji's shotgun, but she finds herself unable to do it and is forced to helplessly watch Makishima kill Yuki right before her eyes.

Taking place three years prior to the series, the episode focuses on Yayoi, who was a guitarist in a band before being imprisoned in a rehabilitation facility for being a latent criminal. As she anxiously waits for release so she can play the guitar again, she is approached by Kogami, who was still a detective, and Ginoza about a series of crimes occuring in the area she was once familiar with. She initially rejects their offer until Kogami gives her some guitar strings which reminded her of a guitarist she admired, Rina Takizaki. When the club they are investigating gets set on fire after Kogami's partner Mitsuru Sasayama jumps the gun in approaching culprits dealing with molotov cocktails, Yayoi decides to search for Rina, only to discover she is part of a resistance group selling the molotov cocktails in the hopes of overthrowing the Sybil system.