Stardate: Unknown. While boxing on the holodeck, Chakotay is contacted by a telepathic species. However, prolonged communication may leave him insane or braindead.

Stardate: 48921.3. While the crew of Voyager investigate a cluster of space-borne life forms, Kes begins exhibiting strange intense symptoms.

Stardate: Unknown. The inhabitants of the holo-city of Fair Haven suspect the Voyager crew of having mystical powers when they witness the use of their futuristic technology.

Stardate: Unknown. Captain Janeway relates the story of her distant ancestor Shannon O'Donnell during the construction of the Millennium Gate on Earth during New Year's Eve 1999. She must convince the last holdout, local bookstore owner Henry Janeway to approve the plan.

Stardate: Unknown. After finding a type of dilithium that can survive at a higher temperatures, Tom Paris comes up with the ingenious idea of attempting to cross the transwarp threshold in an attempt to find a way to get home faster.

Stardate: Unknown. As the crew enjoys time off in a holo-program created by Tom Paris, and set in an Irish village named 'Fair Haven,' Captain Janeway falls for a handsome holo-character specifically designed for her. A deadly neutrino wave approaching Voyager shortly bring the festivities to a halt as this wave may prove to be more dangerous than they first imagined.

Stardate: 50732.4. Harry Kim experiences strong senses of deja vu in an unknown region of space. He soon learns that he is native to this region and that he is T'Karian, not human.

Stardate: Unknown. An alien woman who requests asylum on board Voyager claims that she was onboard the ship a month ago, and she fell in love with Chakotay.

Stardate: Unknown. While Voyager searches for the crew of the crashed Delta Flyer carrying Tuvok, Paris and Ensign Wildman, Neelix must keep Naomi occupied. When it is discovered that Samantha is badly injured, he must decide how much he should tell her daughter.

Stardate: Unknown. Tom Paris and Neelix, while fighting over Kes’s affections, crash-land on a dangerous planet and become responsible for a sickly baby creature.

Stardate: 50063.2. Captain Janeway has to undergo a rigorous ritual in order to save Kes' life when she is knocked unconscious.

Stardate: Unknown. A near-death experience sends Torres into the apparent Klingon afterlife, and leaves her searching for answers when she returns.

Stardate: Unknown. An accident on a Malon freighter becomes a countdown to an explosive toxic-waste disaster, and preventing the explosion depends on Torres' ability to take control of a volatile mission.

Stardate: 50348.1. A dying warlord transfers his consciousness to Kes’s body and uses her to stage a bloody coup on his home world.

Stardate: 51386.4. Janeway and the hologram of Leonardo da Vinci must work together to retrieve Voyager's main computer processor, which has been stolen by alien thieves.

Stardate: 51762.4. An alien test pilot who has the capability of switching bodies manages to take Tom's place aboard Voyager in order to escape the law.

Stardate: Unknown. Tom Paris buys a beaten-up old hot-rod of a ship to restore, but B’Ellana begins to worry as Tom grows increasingly obsessed with the ship.

Stardate: Unknown. Upon discovering a cultural symbol drawn in the ground on a planet that was used by his ancestors to 'heal the land', Chakotay tries to contact the beings his tribe called the 'Sky Spirits.'

Stardate: Unknown. Trans-dimensional photonic lifeforms become entangled in a war with the characters from Tom Paris' "Captain Proton" program after mistaking Voyager's holodeck for reality.

Stardate: Unknown. Kes returns to Voyager in a state of rage, blaming Captain Janeway for her past. Using her expanded Ocampan powers in a fit of revenge, she travels through time to deliver the crew to the Vidiians.

Stardate: 48546.2. Janeway tries to figure out what her dynamic with the crew should be while all stuck in the Delta Quadrant together. Voyager tries to harvest omicron particles to refuel the ship, but inadvertently injures a spacefaring organism.

Stardate: 49164.8. The crew of Voyager make contact with the Caretaker's mate, Suspiria, and a community of Ocampa that have been living on her Array. One of the Ocampa begins to train Kes in growing her psychic abilities, but pushes her to become more powerful than she can control.

Stardate: Unknown. Tuvok and B'Elanna are captured and imprisoned after an away mission to obtain a chemical vital to Voyager's systems from a black market go wrong. Janeway is knocked unconscious and is rescued by a man who believes that she is his daughter.

Stardate: Unknown. When Tuvok crashes on a moon, he discovers three small children who believe they are about to die.

Stardate: 50537.2. Ensign Vorik expresses his desire to mate with B'Elanna during his Pon-Farr. After they get in a brawl over the matter, Torres begins showing signs of the Pon-Farr herself.