Stardate: Unknown. Voyager becomes the target of a society it inadvertently helped to create within a short period of time.

Stardate: 50984.3. Voyager finally enters Borg space, only to discover a threat more powerful than the Borg themselves.

Stardate: 51003.7. The Voyager crew, allied with the Borg, prepare to battle the sinister alien Species 8472. But can an alliance between opinionated individuals and a collective race of consumers survive such fundamental differences?

Stardate: 51268.4. The Voyager crew finds its determination and morale challenged when trying to survive a brutal, long-lasting conflict with a race called the Krenim.

Stardate: Unknown. When Seven discovers an alien communications array, the crew devises a way of sending the Doctor's program across it into the Alpha Quadrant, where he finds himself aboard a Starfleet vessel that has been commandeered by the Romulans.

Stardate: Unknown. 700 years into the future the Doctor must defend the crew of Voyager and set history straight when an alien race claims that the Warship Voyager was responsible for war crimes commited against their race.

Stardate: Unknown. In the future, Harry Kim attempts to correct a mistake he made 15 years earlier, which had resulted in the loss of Voyager during use of experimental engine technology.

Stardate: 51425.4. While Chakotay and Paris remain on board Annorax's time ship, Janeway attempts to repair Voyager enough to pursue her crew members' abductors.

Stardate: Unknown. A transporter accident merges some of Seven of Nine's nanoprobes with The Doctor's mobile emitter to create a 29th century Borg drone.

Stardate: 54890.7 - The Doctor is forced to carry out a secret mission where he must impersonate members of the Voyager crew.

Stardate: Unknown. An alien palaeontologist discovers a common ancestral link between his people and humans. He believes that this proves that his people (the Voth) evolved on Earth and migrated to the Delta Quadrant millions of years ago, but his government is not as willing to believe his interpretation of the evidence.

Stardate: 52619.2. When Janeway hatches a daring plan to steal technology from a crippled Borg ship, Seven is coerced into returning to the Borg collective.

Stardate: Unknown. The crew of a time ship from the future recruits Seven to attempt preventing Voyager's forthcoming destruction.

Stardate: Unknown. The Doctor alters his program, allowing himself to daydream—but the unexpected arises when a crewman on an alien ship taps into The Doctor's program in an attempt to spy on Voyager.

Stardate: Unknown. An obsessed Barclay tries to find a way to communicate with the starship Voyager with the use of an artificially generated micro-wormhole. He becomes so involved that he needs the help of Counsellor Troi to keep his grip on reality.

Stardate: 49301.2. A suicidal Q threatens the future of the Q-Continuum after he requests asylum aboard Voyager.

Stardate: Unknown. A gap in The Doctor's memory uncovers clues to a mystery involving the nature of his existence.

Stardate: Unknown. Voyager encounters another Federation starship, the USS Equinox, in the Delta Quadrant. But as an alien presence prepares an attack, Janeway begins to uncover the Equinox's sinister secret.

Stardate: 48579.4. The discovery of a wormhole leading to the Alpha Quadrant elates the crew, however, their only contact within range is a skeptical and paranoid Romulan.

Stardate: 49548.7. An accident in a plasma cloud duplicates Voyager after they are attacked by the Vidiians. During the aftermath, the ship is severely damaged, Ensign Wildman's baby dies and Harry Kim is sucked into space through a hull breach.

Stardate: Unknown. Voyager is attacked by a Timeship from 500 years in the future, but the two ships are hurled into the past and Voyager is stranded in the year 1996.

Stardate: 54337.5 - Voyager secretly trails two Hirogen ships in pursuit of the renegade hologram ship. Iden, the band's self-appointed leader, begins showing signs of delusional behaviour when he considers himself as the 'saviour of his people', and believes that his people will worship him as a God in their new settlement. With Voyager and the Hirogen ships trailing close behind, the Doctor and Torres must find a way to disable the ships and the holograms before they come under attack from the Hirogen, and before Iden can execute his plan.

Stardate: 50312.5. While trying to rescue Paris and Tuvok, Torres and Chakotay are captured by a gang of weapons smugglers who believe that they are from the government.

Stardate: 51929.3. The crew goes into stasis during a month-long journey through a nebula, leaving Seven and the Doctor in sole charge of running the ship.

Stardate: Unknown. As Janeway's determination to capture Captain Ransom becomes an obsession, Ransom begins having second thoughts about his methods.